You can't get energy from nowhere...

That being said, the Zone ship can do one barrel roll per lap on Flash & Rapier. I'm not sure about Phantom.

Also, it's an element of strategy that affects everyone equally, so I don't see why it's worth complaining about. The fastest TT in the world will still be the fastest TT in the world whether or not you have energy drains, as long as everyone has the same thing. Besides, you can always just go for a singular best lap as opposed to the whole thing.